Server definition

Hash: sha256:546959a8db6c737327e02cf4e0ea94040e739bb0421d815bd9625413d042a772
What it is: What a remote MCP server returned when asked what it offers: 7 tools

The blob, as servednamed by its sha256

{
  "instructions": null,
  "tools": [
    {
      "description": "Accept a quote. Moves the experiment from QuoteSent to WaitingForMaterials. Call after a human (or budget guard) has approved the total_usd from get_experiment_quote. Returns 409 quote_not_confirmable if status is not QuoteSent, or 409 quote_not_finalized if a price has not been posted yet (total_usd null). Fetch get_experiment_quote and wait for total_usd before confirming.",
      "inputSchema": {
        "properties": {
          "quote_id": {
            "minLength": 1,
            "type": "string"
          }
        },
        "required": [
          "quote_id"
        ],
        "type": "object"
      },
      "name": "confirm_quote",
      "outputSchema": null
    },
    {
      "description": "Non-binding USD cost estimate for a hypothetical submission. Pass target_kind='catalog' + target_id for a calibrated band (requires_human_quote=false), or target_kind='custom' for a placeholder order-of-magnitude band (requires_human_quote=true). Call BEFORE submit_experiment when budgeting matters.",
      "inputSchema": {
        "properties": {
          "candidate_count": {
            "minimum": 0,
            "type": "integer"
          },
          "experiment_type": {
            "enum": [
              "yeast_display",
              "mammalian_display",
              "dms"
            ],
            "type": "string"
          },
          "library_diversity": {
            "minimum": 0,
            "type": "integer"
          },
          "target_id": {
            "type": "string"
          },
          "target_kind": {
            "enum": [
              "catalog",
              "custom"
            ],
            "type": "string"
          }
        },
        "required": [
          "experiment_type"
        ],
        "type": "object"
      },
      "name": "estimate_cost",
      "outputSchema": null
    },
    {
      "description": "Fetch the quote for an experiment once status is QuoteSent. Returns quote_id, total_usd, currency (default USD), line_items, valid_until, and terms_url. If status is QuoteSent but the scoping team has not posted a price yet, total_usd is null and a 'note' field explains it is being finalised; poll again until total_usd populates. Pass the quote_id to confirm_quote to accept.",
      "inputSchema": {
        "properties": {
          "experiment_id": {
            "minLength": 1,
            "type": "string"
          }
        },
        "required": [
          "experiment_id"
        ],
        "type": "object"
      },
      "name": "get_experiment_quote",
      "outputSchema": null
    },
    {
      "description": "Fetch results once results_status is 'partial' or 'all' (check via get_experiment_status first). Returns per-sequence pre/post counts, log2_enrichment, percentile, called_hit booleans, plus signed download URLs for the enrichment table CSV, hits FASTA, and (when opted in) raw FASTQ. Yeast-display result shape; mammalian and DMS use the same envelope.",
      "inputSchema": {
        "properties": {
          "experiment_id": {
            "minLength": 1,
            "type": "string"
          }
        },
        "required": [
          "experiment_id"
        ],
        "type": "object"
      },
      "name": "get_experiment_results",
      "outputSchema": null
    },
    {
      "description": "Poll an experiment by id. Returns the current status (Draft/WaitingForConfirmation/QuoteSent/WaitingForMaterials/LibraryConstruction/Sorting/NGS/DataAnalysis/InReview/Done), the orthogonal results_status (none/partial/all), and the status_log. Cheap; safe to poll every few minutes. Webhooks are preferred for production agents.",
      "inputSchema": {
        "properties": {
          "experiment_id": {
            "minLength": 1,
            "type": "string"
          }
        },
        "required": [
          "experiment_id"
        ],
        "type": "object"
      },
      "name": "get_experiment_status",
      "outputSchema": null
    },
    {
      "description": "List the calibrated antigen catalogue. Each entry carries target_id, supported_experiment_types, and typical_campaign_range_usd. Use the target_id on submit_experiment to skip human scoping, or use the custom target shape for a one-off antigen.",
      "inputSchema": {
        "properties": {},
        "type": "object"
      },
      "name": "list_targets",
      "outputSchema": null
    },
    {
      "description": "Submit a binder panel for wet-lab triage. The experiment_spec mirrors the curl /api/v1/experiments contract: experiment_type (yeast_display/mammalian_display/dms), target (target_id or custom), library_design, and sequences as {user_key: amino_acid_string} (use ':' as a multi-chain separator). Optional webhook_url receives signed POSTs on every status transition. Optional idempotency_key dedupes retries. Returns the created experiment with status WaitingForConfirmation and a status_log. Poll get_experiment_status to track progress, get_experiment_results when status_log shows Done.",
      "inputSchema": {
        "properties": {
          "experiment_spec": {
            "properties": {
              "experiment_type": {
                "enum": [
                  "yeast_display",
                  "mammalian_display",
                  "dms"
                ],
                "type": "string"
              },
              "library_design": {
                "properties": {
                  "diversity_estimate": {
                    "minimum": 0,
                    "type": "integer"
                  },
                  "mode": {
                    "type": "string"
                  },
                  "notes": {
                    "type": "string"
                  }
                },
                "type": "object"
              },
              "sequences": {
                "additionalProperties": {
                  "minLength": 1,
                  "type": "string"
                },
                "type": "object"
              },
              "target": {
                "properties": {
                  "custom": {
                    "properties": {
                      "antigen_sequence": {
                        "type": "string"
                      },
                      "name": {
                        "minLength": 1,
                        "type": "string"
                      },
                      "notes": {
                        "type": "string"
                      }
                    },
                    "required": [
                      "name"
                    ],
                    "type": "object"
                  },
                  "target_id": {
                    "minLength": 1,
                    "type": "string"
                  }
                },
                "type": "object"
              }
            },
            "required": [
              "experiment_type",
              "target",
              "sequences"
            ],
            "type": "object"
          },
          "idempotency_key": {
            "maxLength": 128,
            "minLength": 8,
            "type": "string"
          },
          "name": {
            "type": "string"
          },
          "webhook_url": {
            "format": "uri",
            "type": "string"
          }
        },
        "required": [
          "experiment_spec"
        ],
        "type": "object"
      },
      "name": "submit_experiment",
      "outputSchema": null
    }
  ]
}

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